PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1443s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 242aa MW: 25996.9 Da PI: 10.6281

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1443s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.2	4.2e-36	8	160	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec 73 g+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk++eWL+++a +i el+++ + s+s++ Kalax.1443s0005.1.p 8 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDMQDRLGYDQPSKAVEWLIKAAADSIAELPSLtgpfpetarqlcdaklgfE--SSSAA 95 689*************************************************************9999888888888888552..33223 PP TCP 74 ....eaesssssasnsssgkaaksaakskksqksaasalnlak.....esrakarararertrekmrik 133 ea++s+ + ++ + + s+ s+ s++s+ s l+l + ++r +ar+rarer +ek + + Kalax.1443s0005.1.p 96 avaaEADASHTQ---PKM-NVSMSKSASSISETSKGSGLSLTRtdarvNQRIRARERARERAKEKESET 160 212111222222...222.22222222333333333334444431124555777777888777776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-39	9	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.013	10	68	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
IFRVSRASGG KDRHSKVLTS KGLRDRRVRL SVSTAIQFYD MQDRLGYDQP SKAVEWLIKA 60 AADSIAELPS LTGPFPETAR QLCDAKLGFE SSSAAAVAAE ADASHTQPKM NVSMSKSASS 120 ISETSKGSGL SLTRTDARVN QRIRARERAR ERAKEKESET EQTVVNAGQR RRQTAGNPIS 180 HSTINNDNSS SFTELLTGAI GGNQTGANPD GKFDQHATTT TATTAAAFTT IKPYPHKSKK 240 I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-23	15	69	1	55	Putative transcription factor PCF6
5zkt_B	8e-23	15	69	1	55	Putative transcription factor PCF6
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	153	RIRARERARERAK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875888.1	4e-67	transcription factor TCP2
Refseq	XP_015875894.1	4e-67	transcription factor TCP2
Refseq	XP_015875904.1	4e-67	transcription factor TCP2
Swissprot	Q93V43	4e-46	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A067L0H7	2e-63	A0A067L0H7_JATCU; TCP transcription factor BRC1
STRING	Gorai.009G153900.1	4e-64	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	9e-40	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Link Out ? help Back to Top
Phytozome	Kalax.1443s0005.1.p

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]