PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1475s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 290aa MW: 31804.8 Da PI: 10.032

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1475s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	270	1.2e-82	134	289	143	301
GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqS 232 + ke +++k + ++ k +k+kk++k + + ++ ++ +r+k++kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqS Kalax.1475s0002.1.p 134 VPKEPVRTQKAKVDEVVKMPKMKKPRKDP---SLTLENGGSGKRVKQPKKSVDVVINGITMDISRIPIPVCSCTGAPQQCYRWGSGGWQS 220 33444444445555555666666666644...444444555579******************************************** PP GAGA_bind 233 aCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aCCtt +S yPLP+stkrrgaRiagrKmS gafkk+LekLa+eGyd+s+++DL++hWAkHGtnkfvtir Kalax.1475s0002.1.p 221 ACCTTMLSEYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLASEGYDFSKAIDLRTHWAKHGTNKFVTIR 289 ******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.1E-107	1	289	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.2E-83	79	289	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGDDGLNLPN WVNFGSSLKG QSDPQLGWLG VPEAKSFLPV GEPGFALNAN ASCYAQPFFN 60 DQFARQREYG VQRMPPLVTA YVKESWAYPQ PSERFLNILS GANTAYGLVP GAHAMHMVQP 120 VKAECLGLLD ETVVPKEPVR TQKAKVDEVV KMPKMKKPRK DPSLTLENGG SGKRVKQPKK 180 SVDVVINGIT MDISRIPIPV CSCTGAPQQC YRWGSGGWQS ACCTTMLSEY PLPMSTKRRG 240 ARIAGRKMSL GAFKKVLEKL ASEGYDFSKA IDLRTHWAKH GTNKFVTIR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867585.1	5e-92	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2N9F2K9	8e-86	A0A2N9F2K9_FAGSY; Uncharacterized protein
STRING	XP_008389141.1	5e-86	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-68	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Kalax.1475s0002.1.p