PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1512s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 215aa    MW: 23338.4 Da    PI: 6.8613
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1512s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13e-43351341100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da+ss+vyeA ar+rdPvyG++g+i++lq+ql++l
  Kalax.1512s0002.1.p  35 PCAACKILRRRCAEKCVLAPYFPPSEPHKFTIAHRVFGASNIIKFLQDLPEPQRADAISSMVYEAGARIRDPVYGCAGTIFQLQKQLNEL 124
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +aela++++e
  Kalax.1512s0002.1.p 125 QAELAKAQAE 134
                          ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.30434135IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-4335132IPR004883Lateral organ boundaries, LOB
CDDcd008907.72E-5116179No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MACHGDQAAA TGPRSVSHGE DSRAKCPRPG AVIGPCAACK ILRRRCAEKC VLAPYFPPSE  60
PHKFTIAHRV FGASNIIKFL QDLPEPQRAD AISSMVYEAG ARIRDPVYGC AGTIFQLQKQ  120
LNELQAELAK AQAEMVTMQC QQAQLVQTLF AMSNAPSSPE SSPDQQSSFC KGLIIGPSRS  180
PDSFRSNSSS LLEDDRPNGN QNSMWDMEET MCWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-41291556131LOB family transfactor Ramosa2.1
5ly0_B2e-41291556131LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024160819.14e-74LOB domain-containing protein 1-like
SwissprotQ9SK087e-67LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2P6QHT39e-73A0A2P6QHT3_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_007150227.12e-73(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-57LOB domain-containing protein 1