PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1519s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 249aa    MW: 27480.4 Da    PI: 9.5898
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1519s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +++++G g Wk I           +Rt  ++k++w+++
  Kalax.1519s0002.1.p  5 KLKWTAEEEEALLSGIARHGAGKWKNILTDPEfapvfSKRTNIDLKDKWRNL 56
                         689****************************9*****88***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.031161IPR017930Myb domain
SuperFamilySSF466892.8E-15259IPR009057Homeodomain-like
SMARTSM007171.5E-6459IPR001005SANT/Myb domain
PfamPF002491.3E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-13557IPR009057Homeodomain-like
CDDcd116609.30E-19757No hitNo description
SuperFamilySSF467858.71E-15114188IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-14114182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.0E-18115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.615117185IPR005818Linker histone H1/H5, domain H15
PfamPF005382.2E-11119178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGNPKLKWTA EEEEALLSGI ARHGAGKWKN ILTDPEFAPV FSKRTNIDLK DKWRNLTVSS  60
TGHHGMKDKS RIPKLKSLMA STSSNAQRSD SLAIVPHEAP LDVVMEDAPT GAQDPKNAPK  120
YNEMIFEAIS AAKDPNGLDI SAIVTFIEKK LEVPPNFRRL LSSKLRRLVT QGKLDKVQNC  180
YVIKKDTLAL PESKTPPVLA HRETWPQQAR TNGHAIVDTV MEEASISAAY KIADAENKSF  240
LASEAVKES
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242277.13e-89PREDICTED: telomere repeat-binding factor 4
SwissprotF4I7L11e-63TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A200QD614e-89A0A200QD61_9MAGN; SANT/Myb domain
STRINGXP_010242277.11e-88(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-65MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]