PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1541s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 227aa    MW: 23901.8 Da    PI: 5.321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1541s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.37.7e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ ra +Pv+Gavg++ ++++
  Kalax.1541s0002.1.p   2 SCNGCRVLRKGCSETCALRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISKAPDSQRPALFQSLLYEACGRAVNPVSGAVGLLGTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Kalax.1541s0002.1.p  92 HVCQAAVETVLR 103
                          ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.0511107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCALR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISKAPDSQR  60
PALFQSLLYE ACGRAVNPVS GAVGLLGTGN WHVCQAAVET VLRGGTLRSV PADLLDNGGQ  120
ARPPPADESS EEATCSNMCS IMRSGKQDTN KSGGVGVSPP GAAELDLSLS PSHEQQFDKR  180
GRAGSPSEES GTSFEMGQNG HFDVEEQLQL QPQRGSGEVK LLELFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765421e-94KR076542.1 Boehmeria nivea lateral organ boundaries domain protein (LBD16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466482.16e-79LOB domain-containing protein 38
SwissprotQ9SN231e-70LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A067GGX21e-77A0A067GGX2_CITSI; Uncharacterized protein
STRINGXP_006466482.12e-78(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-73LOB domain-containing protein 38