PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1588s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 336aa    MW: 38870.3 Da    PI: 5.819
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1588s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.6e-32231142102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k ye++ede++k ++sw+++ nsfv+ de++f+ ++Lpky+kh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F +g++
  Kalax.1588s0004.1.p  23 FLIKCYEMVEDEANKAVVSWTDSHNSFVINDETDFTLRLLPKYWKHNNFSSFMRQLNIYGFRKVDADR---------WEFANDGFMRGQR 103
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+k+
  Kalax.1588s0004.1.p 104 HLLKTISRRKN 114
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.6E-4919112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3020112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.3E-3420112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-162346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-2823112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-166173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-167486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVKSGAAGDG NCDDVGSPPI APFLIKCYEM VEDEANKAVV SWTDSHNSFV INDETDFTLR  60
LLPKYWKHNN FSSFMRQLNI YGFRKVDADR WEFANDGFMR GQRHLLKTIS RRKNIQGTDH  120
RKSVKQIEKA NKACDRVEYF DLWNEVHNLQ IDKNALMQEL VDLRQHQEML DNKLLLLRDR  180
LKGMEKNQQQ MLSFLVMAMR NPGYFVKLLQ PREHNWPNSE KVKNANMLER VMEVSEAAVT  240
SDVMLATDGT VVRYRPPTYQ EGTCPPSLPS KCFSHPKFEI AEGMQEFFMD SELMKTLMDE  300
NQPMLDYQST FVLPDLHDDG LPDHFVFSSP LIDNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-21211216129Heat shock factor protein 1
5d5v_B1e-21211216129Heat shock factor protein 1
5d5v_D1e-21211216129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448139.11e-111heat stress transcription factor A-8
TrEMBLA0A2P5D4891e-114A0A2P5D489_TREOI; Heat shock transcription factor
STRINGXP_006448138.11e-110(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.14e-72heat shock transcription factor A8