PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1631s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 175aa    MW: 19547.3 Da    PI: 10.2986
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1631s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-2061120357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++ + q+++Lee+++   r+p+a +++++A++l    +++ ++V++WFqN++a+e++
  Kalax.1631s0001.1.p  61 TRWNPAPGQIQALEEMYRCgLRTPTALQIQQIASQLrkfgKIEGKNVFYWFQNHKARERQ 120
                          7*****************99**************************************97 PP
2Wus_type_Homeobox110.21.2e-3560122365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           tRW+P p Qi+ Lee+y++GlrtP++ +iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
  Kalax.1631s0001.1.p  60 GTRWNPAPGQIQALEEMYRCGLRTPTALQIQQIASQLRKFGKIEGKNVFYWFQNHKARERQKR 122
                          68***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.28E-1156121IPR009057Homeodomain-like
SMARTSM003898.9E-558125IPR001356Homeobox domain
CDDcd000863.36E-461122No hitNo description
PfamPF000467.8E-1861120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-762120IPR009057Homeodomain-like
PROSITE profilePS5007110.20369121IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVGFCSGIDL GNICDSRKLL GLTASSSSST KTSAVHSVIA VDHQMDKKEL NESVQTLGTG  60
TRWNPAPGQI QALEEMYRCG LRTPTALQIQ QIASQLRKFG KIEGKNVFYW FQNHKARERQ  120
KRCREFKSPA SKQPKPTVPS LQQQCCSQAM KSRKDSPLGI YTYAENSSFN RKWT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842776.13e-35WUSCHEL-related homeobox 1-like
SwissprotQ6X7K01e-29WOX1_ARATH; WUSCHEL-related homeobox 1
STRINGXP_002526032.12e-33(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-30WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]