PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1650s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 179aa    MW: 19952.7 Da    PI: 6.5054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1650s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-1624108999
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           +++s+rl +p kf ++++    +++ + l  + g++W+v l   k  ++ ++ +GW +Fvk+  ++ gD++vF+++g+ +f   v +f+
  Kalax.1650s0001.1.p  24 PNSSSDRLEIPHKFHQHIEVR--TNVWVLLSGRGGNVWRVGL--LKLHDTLFFNEGWAGFVKDSFVEIGDILVFEYSGDWQF--EVYIFD 107
                          5678899*******9666644..678899999**********..9********************************98888..888887 PP

                          S CS
                   B3  99 k 99 
                          +
  Kalax.1650s0001.1.p 108 E 108
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2214111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2215111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.97116109IPR003340B3 DNA binding domain
CDDcd100173.21E-1616107No hitNo description
SMARTSM010192.3E-918109IPR003340B3 DNA binding domain
PfamPF023621.6E-1323108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MATGAPSALK SVGRKPHFIA TFVPNSSSDR LEIPHKFHQH IEVRTNVWVL LSGRGGNVWR  60
VGLLKLHDTL FFNEGWAGFV KDSFVEIGDI LVFEYSGDWQ FEVYIFDENG CEKEVRDCLG  120
KLGPSLQKKR VRDGDKSSGR VVKKTGSDAC ISNVDCMNHE QEDFLATLCQ PGAPVTEPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.17e-17B3 family protein