PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1764s0002.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 354aa    MW: 40068 Da    PI: 4.6295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1764s0002.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-14191021399
                          TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++l +p +f+++ gg + ++ ++++  + g   W vk+  ++ + +y +++GW eFv++n+L   D++vF+++  ++f+++vkvf+ 
  Kalax.1764s0002.3.p  19 KDQLEVPPPFVRHLGGRPVGEYQMRVWGSAGsYCWIVKV--ERDGAEYCFKNGWPEFVEDNDLGYADVLVFSYE--EKFKFLVKVFDP 102
                          45688******988************99888689*****..*******************************85..79999*****96 PP
2B343.84.5e-142563361398
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ +++pk+ a e ++ +++  +l+++d++ + W +kl+ +  +g++ lt+ W +F +++ LkegD++vF+++g++    +v++++
  Kalax.1764s0002.3.p 256 QHHMTIPKEIAVEKDLYSKS--QLVVRDSKEKLWFMKLS-TAEDGSVNLTEKWASFYESHSLKEGDSCVFEFIGSRI--VHVQIIS 336
                          3559*******999777444..6***************4.77778899***********************998444..4888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.6177103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-157103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-158104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-129101No hitNo description
SMARTSM010191.3E-1010103IPR003340B3 DNA binding domain
PfamPF023621.2E-1119101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-16241337IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-16244338IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.026244338IPR003340B3 DNA binding domain
SMARTSM010195.8E-5247338IPR003340B3 DNA binding domain
CDDcd100172.29E-9256336No hitNo description
PfamPF023621.8E-11256336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRHVADRASF MKLMINDYKD QLEVPPPFVR HLGGRPVGEY QMRVWGSAGS YCWIVKVERD  60
GAEYCFKNGW PEFVEDNDLG YADVLVFSYE EKFKFLVKVF DPSGLKRNMP SLRGEEEEEV  120
AVETPLQSDT ESEDGQNMPM DSDEQPIFYV DEEGECHVGA GGKRVQVSME TSQEESLCHM  180
EVGGEKEKEG RGCTVSTQKG SVSCSDMKGQ GKVELTRKES LFWFEDKAKE SVEERIAPPL  240
SSDRSRFIAT WSSTWQHHMT IPKEIAVEKD LYSKSQLVVR DSKEKLWFMK LSTAEDGSVN  300
LTEKWASFYE SHSLKEGDSC VFEFIGSRIV HVQIISASSV MSHAGVEDVL LRD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-10B3 family protein