PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1802s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 215aa    MW: 23800.4 Da    PI: 6.502
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1802s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.61.5e-2447108159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg +WrKYGqK++ +s+fprsY+rC+++   gC ++k+v++s++ p +  +tY g+H+++
  Kalax.1802s0001.1.p  47 VDDGQAWRKYGQKTILNSPFPRSYFRCAHKtnqGCLATKQVQQSRSKPPLYSVTYDGHHTCT 108
                          58*************************9988889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-2539108IPR003657WRKY domain
PROSITE profilePS5081122.60742105IPR003657WRKY domain
SuperFamilySSF1182905.1E-2444108IPR003657WRKY domain
SMARTSM007741.4E-3647109IPR003657WRKY domain
PfamPF031068.5E-2548107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
EEEVSAKWEE DSGESCKQRA SQRKGRRGCY KRRKGSQSWT TLVPALVDDG QAWRKYGQKT  60
ILNSPFPRSY FRCAHKTNQG CLATKQVQQS RSKPPLYSVT YDGHHTCTHY LKSPSLFVAD  120
STADRPSVLL SFSNPAESSD QYPGRPLFGS PPSSDYMLSP ESFAAAFDQG IASNASSNCS  180
DLEGMEFMNH HEVGVGIGMC ATDFDDLMKL EEFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-2040107168OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-25WRKY DNA-binding protein 70