PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1899s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 336aa    MW: 37067.6 Da    PI: 8.4206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1899s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.3e-11108132226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++ t tCk+G++CkF H+
  Kalax.1899s0001.1.p 108 GEKDCTHYMLTRTCKFGETCKFDHP 132
                          7889********************8 PP
2zf-CCCH29.51.3e-09159184227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f++t  Ck+G  CkF+H++
  Kalax.1899s0001.1.p 159 GEPDCPYFLKTQRCKFGLMCKFNHPK 184
                          6899********************96 PP
3zf-CCCH38.51.9e-12204229227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C f+++tG+Ck+G++C+F+H++
  Kalax.1899s0001.1.p 204 FEPICAFYLKTGICKFGATCRFHHPK 229
                          689*********************96 PP
4zf-CCCH322.1e-10284305526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+++tG Cky  +C+++H+
  Kalax.1899s0001.1.p 284 DCPFYLKTGSCKYSVTCRYNHP 305
                          7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0031106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225106134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5107133IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8108132IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864157185IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7159184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4163185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53202230IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5202229IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10204229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6207230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5207228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746279307IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4279306IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8284305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MANQLLRFNT SGSGGALPLT DSDSSGDTSA GPAAVSALGA PGFWSPGPVA PSYQFPGLKR  60
SSQVLYHHNI VSTHNPIGQN DWLSMSYLAK RPRIEGSSIL PIYPQRPGEK DCTHYMLTRT  120
CKFGETCKFD HPIWVPEGGI PDWKEVPPVA TECLPERSGE PDCPYFLKTQ RCKFGLMCKF  180
NHPKEKLVYL NDKGESGALP ERPFEPICAF YLKTGICKFG ATCRFHHPKD IQRSVLEQGS  240
LTTELKSFSA KIQGTTGDVK PNVILTPALA HNAKGLPVRP GELDCPFYLK TGSCKYSVTC  300
RYNHPDRTGT YTVDFIIILY ITNKTRVLVN CEIMM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830433.11e-122PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-111C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2I4FFK71e-120A0A2I4FFK7_JUGRE; zinc finger CCCH domain-containing protein 37 isoform X2
STRINGVIT_19s0085g01180.t011e-120(Vitis vinifera)
STRINGPOPTR_0008s07980.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-113floral homeotic protein (HUA1)