PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1899s0001.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 311aa    MW: 34146.3 Da    PI: 8.5254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1899s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.8e-1183107226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++ t tCk+G++CkF H+
  Kalax.1899s0001.2.p  83 GEKDCTHYMLTRTCKFGETCKFDHP 107
                          7889********************8 PP
2zf-CCCH29.61.2e-09134159227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f++t  Ck+G  CkF+H++
  Kalax.1899s0001.2.p 134 GEPDCPYFLKTQRCKFGLMCKFNHPK 159
                          6899********************96 PP
3zf-CCCH38.61.8e-12179204227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C f+++tG+Ck+G++C+F+H++
  Kalax.1899s0001.2.p 179 FEPICAFYLKTGICKFGATCRFHHPK 204
                          689*********************96 PP
4zf-CCCH32.21.9e-10259280526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+++tG Cky  +C+++H+
  Kalax.1899s0001.2.p 259 DCPFYLKTGSCKYSVTCRYNHP 280
                          7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.22581109IPR000571Zinc finger, CCCH-type
SMARTSM003560.003181108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-582108IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-883107IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864132160IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.0E-4137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4138160IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53177205IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10179204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6182205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5182203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746254282IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4254281IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8259280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANQLLRFNT SGSGGALPLT DSDSSGDTSA GPAAVSALGA PGFWSPGPVA PSYQFPGLKR  60
SSQAKRPRIE GSSILPIYPQ RPGEKDCTHY MLTRTCKFGE TCKFDHPIWV PEGGIPDWKE  120
VPPVATECLP ERSGEPDCPY FLKTQRCKFG LMCKFNHPKE KLVYLNDKGE SGALPERPFE  180
PICAFYLKTG ICKFGATCRF HHPKDIQRSV LEQGSLTTEL KSFSAKIQGT TGDVKPNVIL  240
TPALAHNAKG LPVRPGELDC PFYLKTGSCK YSVTCRYNHP DRTGTYTVDF IIILYITNKT  300
RVLVNCEIMM *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312214.21e-108zinc finger CCCH domain-containing protein 37 isoform X2
RefseqXP_011012050.11e-108PREDICTED: zinc finger CCCH domain-containing protein 37-like
RefseqXP_018830433.11e-108PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q32e-99C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0D2U1H01e-107A0A0D2U1H0_GOSRA; Uncharacterized protein
TrEMBLA0A314ZNF11e-107A0A314ZNF1_PRUYE; Zinc finger CCCH domain-containing protein 37 isoform X2
STRINGPOPTR_0008s07980.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-101floral homeotic protein (HUA1)