PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.2312s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 173aa MW: 19244.5 Da PI: 7.0301

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.2312s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	11	64	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t++q++ Le+ F +++++++ + +L+++l+L+ rq+ vW+qN+Ra++k Kalax.2312s0002.1.p 11 SKRRLTEDQIRLLETNFSFSKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWK 64 56789************************************************9 PP
2	HD-ZIP_I/II	100.5	1.5e-32	12	102	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl+++q++lLE++F+ ++kL+++ K +l+++L+l prq+avW+qn+RAR+kt+ +E+d++a+++++ +++++n++Le+eve+L+eel+ Kalax.2312s0002.1.p 12 KRRLTEDQIRLLETNFSFSKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWKTQAMESDHKAMQSKLASVMSHNRKLEREVEKLQEELD 101 9**************************************************************************************997 PP HD-ZIP_I/II 93 e 93 + Kalax.2312s0002.1.p 102 Q 102 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-17	4	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.337	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	7	73	IPR009057	Homeodomain-like
SMART	SM00389	6.6E-16	8	70	IPR001356	Homeobox domain
CDD	cd00086	4.66E-15	9	66	No hit	No description
Pfam	PF00046	8.2E-15	11	64	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
DTEKPDSGKG SKRRLTEDQI RLLETNFSFS KKLDQDLKYH LSQQLNLPPR QIAVWYQNKR 60 ARWKTQAMES DHKAMQSKLA SVMSHNRKLE REVEKLQEEL DQARAMVHAS STSVPAYSCA 120 VSTSGEDDGG SSFVDRSECC LDNELYACVA GVESRHQFLS VAGGFGAFGP SI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-33	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Kalax.2312s0002.1.p