PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.2449s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 245aa MW: 26000.4 Da PI: 7.8868

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.2449s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	60.8	2.6e-19	1	32	31	62
zf-Dof 31 yfCkaCrryWtkGGalrnvPvGggrrknkkss 62 yfCk+CrryWt+GG+lrn+PvGgg+rknk+s Kalax.2449s0001.1.p 1 YFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSP 32 9****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.1E-13	1	30	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	16.358	1	30	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-11	1	30	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
YFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SPSSTSSAPP GVAAKKLFVH PSSLQNPNTM 60 IHQPERAGHD LNLSFPNHHQ DYRSMSDFVH LPNISSQTSA TTTATSHLSA LELLTGMTSR 120 GGVGGGFSNA FMPISDPDSV YSSTSFSNFM HDFKPPTLNF SLDNGLGIGQ SGSAGFTHSD 180 QISTSGGGGG GRVLVSPFDD LKNQHQADDH HHQHQQQAEQ NRGHGVVSTG YWTGMLGGGS 240 GSDW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002262703.1	7e-50	PREDICTED: dof zinc finger protein DOF4.6
TrEMBL	F6HU58	2e-48	F6HU58_VITVI; Uncharacterized protein
STRING	VIT_02s0025g02250.t01	3e-49	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-25	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.2449s0001.1.p