PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.2579s0001.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YA

Protein Properties

Length: 181aa MW: 20035.7 Da PI: 10.4708

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.2579s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.5	3e-30	39	95	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR Rak+e kk +++rkpy+heSRh hA+rRpRg+gGrF Kalax.2579s0001.2.p 39 DGPIYVNAKQYHGIIRRRLYRAKAELVKKS-IRARKPYMHESRHLHAMRRPRGCGGRF 95 57**********************9999.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-33	37	98	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.655	38	98	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.8E-27	41	95	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-23	41	63	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	43	63	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-23	72	95	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVYSKYPYGD QSYSVMSTYG PQVAVQGRVM LPLDMTSDDG PIYVNAKQYH GIIRRRLYRA 60 KAELVKKSIR ARKPYMHESR HLHAMRRPRG CGGRFLNTKI SDAGMGGNSM KSTSNGLLTQ 120 PTGSPSSGIF QSDSGTLNSP KQSNSDMSHI SGSEATSMYT RGDLRRFTTN FLSHSLPAVM 180 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	3e-18	39	96	2	60	HAPB protein
4g92_A	3e-18	39	96	2	60	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022747632.1	1e-74	nuclear transcription factor Y subunit A-10-like isoform X2
Swissprot	Q8LFU0	5e-45	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A2R6QVS9	1e-73	A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like
STRING	VIT_08s0032g01190.t01	1e-69	(Vitis vinifera)
STRING	XP_008350234.1	9e-71	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-47	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Kalax.2579s0001.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]