PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.3004s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 222aa    MW: 23562.4 Da    PI: 5.1024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.3004s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.12.7e-11201221222
                          --SS-EEEEEEE--TT-SS-E CS
                 WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                          +Dgy+WrKYGqK vk+s++pr
  Kalax.3004s0001.1.p 201 EDGYRWRKYGQKAVKNSPYPR 221
                          8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-12185221IPR003657WRKY domain
SuperFamilySSF1182902.48E-9192221IPR003657WRKY domain
PROSITE profilePS5081114.079195221IPR003657WRKY domain
PfamPF031063.9E-7201221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSDHQPTDFF NFHDPFVTYQ YSNLLGQAGA TTAPTSAASS SLYDNSSYNS GITGMSFSES  60
LDGSVDYNTL ARAFGLSSSS SEELFSSVVN EGLGYGKAQG DQMLQGVGNN GQIGAIGGSS  120
GGGEVVLASP GPNSSISSSS GEASGREEDC SKEQKVAKGS HEDEDGDSSK KQSKQSNKKG  180
EKRQREPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPYP R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353824.19e-46PREDICTED: probable WRKY transcription factor 71
RefseqXP_009360850.19e-46PREDICTED: probable WRKY transcription factor 71
STRINGXP_009353824.14e-45(Pyrus x bretschneideri)
STRINGXP_009360850.14e-45(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-20WRKY DNA-binding protein 28