PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g06640.1
Common NameLOC4324065, Os01g0159800, OsJ_00465
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 259aa    MW: 28327.5 Da    PI: 9.9178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g06640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-1169113554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+e+ErrRR+riN  + +Lr+++P       k ++Ka+ L ++v+ +k+L
  LOC_Os01g06640.1  69 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 113
                       9************************9.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1355122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.76164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1368123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-869113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-5161223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAECQPLQLQ EGKKLQELQP YDGCNPSVYR GPILLPRQAN SAPPAVPPEM SSSSGSGRSA  60
TEARALKIHS EAERRRRERI NAHLTTLRRM IPDTKQMDKA TLLARVVDQV KDLKRKASEI  120
TQRTPLPPET NEVSIECFTG DAATAATTVA GNHKTLYIKA SISCDDRPDL IAGITHAFHG  180
LRLRTVRAEM TSLGGRVQHV FILCREEGIA GGVSLKSLKE AVRQALAKVA SPELVYGSSH  240
FQSKRQRILE SHCSIMSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.14430.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329915010.0
Expression AtlasQ7F7Z2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g06640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g06640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315680.0CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.10.0putative transcription factor bHLH107
TrEMBLA0A0E0MRM80.0A0A0E0MRM8_ORYRU; Uncharacterized protein
TrEMBLB8ADE10.0B8ADE1_ORYSI; Uncharacterized protein
TrEMBLQ7F7Z20.0Q7F7Z2_ORYSJ; ESTs C26093(C11622)
STRINGORUFI01G04050.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-28bHLH family protein
Publications ? help Back to Top
  1. Li X, et al.
    Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
    Plant Physiol., 2006. 141(4): p. 1167-84
    [PMID:16896230]