PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g08790.1
Common NameLOC4325336, Os01g0183400, OSNPB_010183400, P0489A01.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 239aa    MW: 25146.7 Da    PI: 4.2109
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g08790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.41.8e-1411519917100
             NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprde 100
                       ++ +lPl r+k+i+++d d+k+++ ea  l++ a elf+  l+  +   a    rr+++   + aa  +   + dfl+d  p  e
  LOC_Os01g08790.1 115 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAASRRGRRAVRAVHVRAAAREhRPTADFLLDCLPAAE 199
                       4668***********************************************************98876515699*****999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-14117210IPR009072Histone-fold
PfamPF008082.3E-13119180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-17119196IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EREEAIDAVA GEAGEVMKEV  60
VEGEREEANA MADEADEAME PEGEREEEAD AVADEATEPM EQVEGEGEDG DAAAQRPALP  120
LGRVKRIIRV DRDIKKVTNE AALLIAAATE LFVGSLAAGA HRAASRRGRR AVRAVHVRAA  180
AREHRPTADF LLDCLPAAEE AAPARAAAAG PSRGGGRGEA KPLPRGTRRI DAFFQKTT*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154349350.0
Expression AtlasQ5VRY6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g08790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g08790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024840.0AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879187.11e-157tropomyosin
TrEMBLA0A0E0MSA91e-156A0A0E0MSA9_ORYRU; Uncharacterized protein
TrEMBLQ5VRY61e-156Q5VRY6_ORYSJ; Os01g0183400 protein
STRINGORUFI01G05810.11e-157(Oryza rufipogon)
STRINGOS01T0183400-001e-157(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Representative plantOGRP94721213