PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09550.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 233aa    MW: 25550.5 Da    PI: 8.0751
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09550.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.64.7e-1043797128
               NAM  97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LOC_Os01g09550.4   4 GRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 37 
                       6889*********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.616156IPR003441NAC domain
SuperFamilySSF1019414.84E-13356IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL EEEKEGELVV CKIFYQTQPR  60
QCSWSSDRGG GAAATASAVT TAAVQQDQQR RRDSGSGSCS STRDHEVSAT SYSTAGYAVA  120
AAVEMQHLKH AADHFSFAPF RKSFEEVGIS GDQVHSNQLG RSEQQHAGQE QQPHRPLLAT  180
TTAVPATAFL ISRPTNPVSN IVPPAMQHAS VVLDHDQFHV PAILLHHDKF QV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.274690.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379909620.0
Expression AtlasB7F736-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09550.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1213390.0AK121339.1 Oryza sativa Japonica Group cDNA clone:J023120G13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615071.11e-170NAC domain-containing protein 75 isoform X6
RefseqXP_015615072.11e-170NAC domain-containing protein 75 isoform X7
RefseqXP_025879363.11e-170NAC domain-containing protein 75 isoform X7
RefseqXP_025879364.11e-170NAC domain-containing protein 75 isoform X7
RefseqXP_025879365.11e-170NAC domain-containing protein 75 isoform X7
TrEMBLB7F7361e-173B7F736_ORYSJ; cDNA clone:J023120G13, full insert sequence
STRINGORUFI01G06380.11e-170(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.15e-28NAC domain containing protein 75