PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09940.1
Common NameP0498B01.26
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 68aa    MW: 7125.01 Da    PI: 10.6628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-05219825
                      HHHHHHHHHHHHHHHHHC CS
               HLH  8 rErrRRdriNsafeeLre 25
                       Er+RR+++N +f  L++
  LOC_Os01g09940.1  2 SERKRREKLNGSFVALQS 19
                      6*************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.78E-5237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MSERKRREKL NGSFVALQSR PYVLPPGSKL ERQDVVDTDR SKGVREVSRV KAVGAGGEEP  60
GAGGAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERKRRE
238RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.884952e-56callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5SMY9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034174e-57AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149574e-57AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ5SMY97e-39Q5SMY9_ORYSJ; Uncharacterized protein P0498B01.26
STRINGONIVA01G07100.15e-39(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5451622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-07bHLH family protein