PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g14030.1

Common Name

B1066G12.15, LOC4327696, Os01g0242400, OSNPB_010242400

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 250aa MW: 26091.4 Da PI: 9.8748

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g14030.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.1	4.9e-32	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + l+a LOC_Os01g14030.1 11 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAALRA 103 7********************************************9977766************************************* PP DUF260 93 elallkee 100 e a+l+++ LOC_Os01g14030.1 104 ENAALRRQ 111 *9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.421	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-28	11	108	IPR004883	Lateral organ boundaries, LOB

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009066	anatomy	anther
PO:0001004	developmental stage	anther development stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MTGGGSGGAG ACAVCKHQRR KCEPNCELAA YFPANRMNDF RALHLVFGVA NLTKLIKANA 60 TEAARRRAAE TLTWEARWRE RDPSEGCYRE VSCLRRDNAA LRAENAALRR QADQCACCAG 120 AAGVRHASSP TTLQHQLLLV SAYNGATAAR PGNVVPHNAT VVPGGFVAAA AGVRGANGNG 180 AMSSVRPPPH HVQAPATQTV TGFVAHAQDD RYRAVSVCPP AANAAAVPRS GAAVRGQGDY 240 RDKISDAAR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	8	117	7	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	8	117	7	116	LOB family transfactor Ramosa2.1
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Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32993933	0.0
Expression Atlas	Q5NA79	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g14030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g14030

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003201	0.0	AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644107.1	0.0	protein ASYMMETRIC LEAVES 2
TrEMBL	A0A0E0MTS1	1e-179	A0A0E0MTS1_ORYRU; Uncharacterized protein
TrEMBL	Q5NA79	1e-179	Q5NA79_ORYSJ; Os01g0242400 protein
STRING	ORUFI01G09790.1	1e-180	(Oryza rufipogon)
STRING	OS01T0242400-01	1e-180	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33
Representative plant	OGRP14214	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-13	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	LOC_Os01g14030.1
Entrez Gene	4327696