PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g14440.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 584aa    MW: 60502.4 Da    PI: 8.7383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g14440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30301359259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  LOC_Os01g14440.1 301 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGTHNHP 359
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-34285361IPR003657WRKY domain
SuperFamilySSF1182905.62E-28293361IPR003657WRKY domain
PROSITE profilePS5081129.505295361IPR003657WRKY domain
SMARTSM007744.1E-37300360IPR003657WRKY domain
PfamPF031063.7E-27302359IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MEADDSGGGG GRARRSVEVD FFSDEKKNMK KSRVSGGVAA EADDAKGPAA AGLAIKKEDL  60
TINVSRRRLL RSSIARHLFN SRRSNACARP CSLQLLPAGN NARSDRSMVV DDDAASRPDH  120
EEKSRSSNEL AAMQAELGRM NEENQRLRGM LTQVTTSYQA LQMHLVALMQ QRPQMMQPPT  180
QPEPPPPHQD GKAEGAVVPR QFLDLGPSSG AGGEAAEEPS NSSTEAGSPR RSSSTGNKDQ  240
ERGDSPDAPS TAAAWLPGRA MAPQMGAAGA AGKSHDQQAQ DANMRKARVS VRARSEAPII  300
ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRSILIT TYEGTHNHPL  360
PPAAMAMAST TSAAASMLLS GSMPSADGAA GLMSSNFLAR TVLPCSSSMA TISASAPFPT  420
VTLDLTHAPP GAPNAVPLNA ARPGAPAPQF QVPLPGGGMA PAFAVPPQVL YNQSKFSGLQ  480
MSSDSAEAAA AAAAAAQFAQ PRPPIGQLPG PLSDTVSAAA AAITADPNFT VALAAAITSI  540
IGGQHAAAAG NSNANNTNTN TTSNTNNTSS NNTTSNNTNS ETQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22287363176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.61440.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO508439610.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g14440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g14440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769280.0AY676928.1 Oryza sativa (indica cultivar-group) transcription factor OsWRKY99 (OsWRKY99) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622141.10.0probable WRKY transcription factor 31 isoform X1
TrEMBLQ0JP370.0Q0JP37_ORYSJ; Os01g0246700 protein
STRINGORGLA01G0083800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-98WRKY family protein