PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g15350.1
Common NameLOC4326230, Os01g0257400, P0462H08.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 467aa    MW: 49089.1 Da    PI: 7.9939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g15350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-105278127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +++rtG C yG++C+++H++
  LOC_Os01g15350.1 52 PGEADCVYYLRTGACGYGENCRYNHPR 78
                      57899********************96 PP
2zf-CCCH37.34.7e-12102128127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C +++++GtCk+G++Ck+ H++
  LOC_Os01g15350.1 102 PGQPVCEYYMKNGTCKFGSNCKYDHPR 128
                       5789*********************96 PP
3zf-CCCH33.47.6e-11147172227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C ++ +tG+Ck+G++CkF+H++
  LOC_Os01g15350.1 147 GEKDCTYYVKTGHCKFGSTCKFHHPE 172
                       5789********************96 PP
4zf-CCCH37.34.6e-12300326127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++++tG Ck+G+ Ck++H++
  LOC_Os01g15350.1 300 PGQPECQYYLKTGSCKFGSACKYHHPQ 326
                       5789*********************97 PP
5zf-CCCH28.62.4e-09348372327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +C ++ + G+Ck+G++CkF H++
  LOC_Os01g15350.1 348 SQPCAYYTQHGFCKFGPTCKFDHPM 372
                       679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2115179IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-65178IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-75378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765101129IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7101128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5106129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502145173IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5145172IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6148171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4151171IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413299327IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5303326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4305325IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69345373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6347375IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7347372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5349370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEPYAAAEGG GGGGGGGSTD TGLEESMWRM GLGGGGGGGG EAVAAGRLPE RPGEADCVYY  60
LRTGACGYGE NCRYNHPRDR AAAAVLNGGG KTTHSAEYPE RPGQPVCEYY MKNGTCKFGS  120
NCKYDHPREG SVQAVMLNSS GYPLRSGEKD CTYYVKTGHC KFGSTCKFHH PEIGGVSETP  180
NMYPPVQPQP ISSSHPYQHL AGWQMGRPPV LPGSFLSGSY PPMMLPSTVV PMQGWNPYIS  240
PVNQVASAGG HQTVQAGPFY GLSHQGPSAA VTYGSQYAPL SSSTMPSSSS KQEPAFPARP  300
GQPECQYYLK TGSCKFGSAC KYHHPQYLNT PKSNCMLSPL GLPLRPGSQP CAYYTQHGFC  360
KFGPTCKFDH PMGTLSYSPS ASSITDLPIA PYPLNYAVAP VAPPSSSSDL RPEYLLTKEF  420
SANQSASPGT TCGPAGAMLK AYAPHMLIRP QTSGAGGMVT THGGEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.90290.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329839430.0
Expression AtlasQ5NAV3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g15350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g15350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0E0MU560.0A0A0E0MU56_ORYRU; Uncharacterized protein
STRINGORUFI01G10840.10.0(Oryza rufipogon)
STRINGOS01T0257400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-115C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]