PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g16740.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1213aa MW: 140283 Da PI: 7.3602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g16740.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.9	3.2e-13	455	529	1	66
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkakl 66 +++n+YA+++GFs+++ +s ++ krn+e+++ tf+C+k+ k++ ++k ++ er+t+++ t+Ck+ + LOC_Os01g16740.1 455 NYFNFYAYMAGFSIVNVHSARTtskKRNREVIRVTFKCYKYVKADCNTKPetvdetATGERKTNEVVGTECKCVM 529 59************99998888899**************9999899999889999**********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-12	455	530	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-33	652	744	IPR018289	MULE transposase domain
Pfam	PF04434	1.1E-5	937	970	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.002	937	973	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-7	948	975	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1213 aa Download sequence Send to blast
MEINEKIDDR EANLQYAQKG ITSLSDLEKG KGEEKEKSTD SGKKSQGLKI MKQLAGKIEA 60 GTSTDSVNSK SGTEEKILKI SNDLKKADEK QLQEVKTSRG FETDTDKKAQ GFKTMKQLPG 120 IFEDGTCTAL VQSNSGLAFL EKNYNTTQSY KMQEKQRQHK IRGHLSDIGS KIEKKNTTNQ 180 TGLALLEENY NTTLSYRVQE NMDITKTGKG KIMKQIAGNS KDFSETEAKL DKTKNSEADI 240 GCSALNESEK KNGANNAKVD YENNVLSLLD QDYIVDSFIS YTSLMEHIIS SQPKRCNELK 300 VEGTQNDTIE TGIGQDYQKV DESLNSHVEY QSEQRCSMDI LNLQESVQDK SLEQTSEIGY 360 SNVDNQSQHA WSLDIFNLQE SVQEPILEQS SDIGNISGNG VDDAVLNDEL LTEEDIEQFL 420 EEEQQEALKG NNANIDRKYI PELDQKFKSI IEAQNYFNFY AYMAGFSIVN VHSARTTSKK 480 RNREVIRVTF KCYKYVKADC NTKPETVDET ATGERKTNEV VGTECKCVML SPPDEVRFLR 540 SHKYLSTEER VLIRTLKECH IPTRNMIVIL SVLRGGLTSL PYTKKDISNV RTEINRETSS 600 NDMMQCLTYL KKKQEENPNF FYEFDLDENR KGRNFFWTDG RSRDWYHKFG DCISFDTTFL 660 TNRYNLPFAP FVGVSGHGNT ILFGCAFLHD ETTETFEWLF ITFLKCMNGK QPKTIITDQD 720 GAMRAAIKNI FREAKHRNCF FHIISKALKR SGSLFKKRQG LYAIYSDIIH NCLTEEEFEV 780 LWQDMIQEFN LQEINFLAHM WHIRKRFIPV YFKTNFCLFI QSTALSEGTN SRFKKNVGPQ 840 YSIRSFLTEY ERVMETIQNL EQHDDHESRT KRPTSFWSNY SIEYQAVKLY NNKIFKRFQA 900 QLRKTLELQV EEIEKFKCYA VFEAENVISK QIRKRKYLVI MDLDIEEYTC ICAMFQKDGI 960 LCSHILKIML DLSIKEIPEK YIMHRWRKNH KSTEIIKGKE IIPVSESSVL RFNILSRKFA 1020 EIASKGAKTV EAYKFLMEES EKIDEKLNTM FSHEFEGADK QQGHEENNSF SPTAEVNEKS 1080 ENTHIHGDIR NKEDYIEDPD IANSKGRTKQ RYKTIREQIE DKETNHCSHC GRTEHTFPTC 1140 PFKHIEFYLA RKRKRKIPSK PQKSGEEEKK EATSKKRKPN KKENTEIGKS HQDEVQQLSK 1200 RVKKKSEINT SK*

Sequence ? help Back to Top

Protein Sequence Length: 1213 aa Download sequence Send to blast

MEINEKIDDR EANLQYAQKG ITSLSDLEKG KGEEKEKSTD SGKKSQGLKI MKQLAGKIEA  60
GTSTDSVNSK SGTEEKILKI SNDLKKADEK QLQEVKTSRG FETDTDKKAQ GFKTMKQLPG  120
IFEDGTCTAL VQSNSGLAFL EKNYNTTQSY KMQEKQRQHK IRGHLSDIGS KIEKKNTTNQ  180
TGLALLEENY NTTLSYRVQE NMDITKTGKG KIMKQIAGNS KDFSETEAKL DKTKNSEADI  240
GCSALNESEK KNGANNAKVD YENNVLSLLD QDYIVDSFIS YTSLMEHIIS SQPKRCNELK  300
VEGTQNDTIE TGIGQDYQKV DESLNSHVEY QSEQRCSMDI LNLQESVQDK SLEQTSEIGY  360
SNVDNQSQHA WSLDIFNLQE SVQEPILEQS SDIGNISGNG VDDAVLNDEL LTEEDIEQFL  420
EEEQQEALKG NNANIDRKYI PELDQKFKSI IEAQNYFNFY AYMAGFSIVN VHSARTTSKK  480
RNREVIRVTF KCYKYVKADC NTKPETVDET ATGERKTNEV VGTECKCVML SPPDEVRFLR  540
SHKYLSTEER VLIRTLKECH IPTRNMIVIL SVLRGGLTSL PYTKKDISNV RTEINRETSS  600
NDMMQCLTYL KKKQEENPNF FYEFDLDENR KGRNFFWTDG RSRDWYHKFG DCISFDTTFL  660
TNRYNLPFAP FVGVSGHGNT ILFGCAFLHD ETTETFEWLF ITFLKCMNGK QPKTIITDQD  720
GAMRAAIKNI FREAKHRNCF FHIISKALKR SGSLFKKRQG LYAIYSDIIH NCLTEEEFEV  780
LWQDMIQEFN LQEINFLAHM WHIRKRFIPV YFKTNFCLFI QSTALSEGTN SRFKKNVGPQ  840
YSIRSFLTEY ERVMETIQNL EQHDDHESRT KRPTSFWSNY SIEYQAVKLY NNKIFKRFQA  900
QLRKTLELQV EEIEKFKCYA VFEAENVISK QIRKRKYLVI MDLDIEEYTC ICAMFQKDGI  960
LCSHILKIML DLSIKEIPEK YIMHRWRKNH KSTEIIKGKE IIPVSESSVL RFNILSRKFA  1020
EIASKGAKTV EAYKFLMEES EKIDEKLNTM FSHEFEGADK QQGHEENNSF SPTAEVNEKS  1080
ENTHIHGDIR NKEDYIEDPD IANSKGRTKQ RYKTIREQIE DKETNHCSHC GRTEHTFPTC  1140
PFKHIEFYLA RKRKRKIPSK PQKSGEEEKK EATSKKRKPN KKENTEIGKS HQDEVQQLSK  1200
RVKKKSEINT SK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1150	1155	RKRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g16740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g16740

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP000837	0.0	AP000837.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0424A08.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q75L92	0.0	Q75L92_ORYSJ; Uncharacterized protein
STRING	OB09G10870.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-82	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os01g16740.1