PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g18420.1
Common NameOsJ_01376, P0511C01.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26415.3 Da    PI: 10.6949
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g18420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.4e-151250442
                      -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        +s r  tf kRr g++KKA EL  LC++ v+v+++++
  LOC_Os01g18420.1 12 AKDSTRRLTFKKRRRGLIKKAGELASLCGIGVCVVVYGE 50
                      56788999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.339150IPR002100Transcription factor, MADS-box
CDDcd002661.94E-27285No hitNo description
PRINTSPR004046.2E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21395IPR002100Transcription factor, MADS-box
PfamPF003192.3E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARNRIILKK VAKDSTRRLT FKKRRRGLIK KAGELASLCG IGVCVVVYGE GEVKPEVWPS  60
APEARAILSR FNSAPNIDRF KRVTNQEQYL RKRIAKARER TSKADDVNRE RDATIMLYEA  120
ATDKRPVADL NVQELTNLGL VINERINHLK ERIERLGGAA LMAPPPSTQP TEASSSLPPL  180
VPYANGAGME GNKRMKVSTH QKGWFINMST MTGDAGTSAD VEGNTGVGTS ARGDMMHLSN  240
*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ9LH20
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g18420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g18420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020700.0AP002070.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0511C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878329.11e-178agamous-like MADS-box protein AGL80
TrEMBLQ9LH201e-177Q9LH20_ORYSJ; Putative MADS-box protein AGL35
STRINGORUFI01G13010.11e-176(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.13e-23M-type_MADS family protein