PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g23750.1
Common NameB1088D01.22, Os01g0340000, OsJ_01620, OSNPB_010340000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 407aa    MW: 42527.8 Da    PI: 4.3758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g23750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.7e-094271639
                      HHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF 16 RrngilKKAeELSvLCdaevavii 39
                      R+++++K A+ELSvLCd+ va++ 
  LOC_Os01g23750.1  4 RKETVIKMAKELSVLCDVPVALVC 27
                      9********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.321126IPR002100Transcription factor, MADS-box
PfamPF003195.6E-6427IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-8465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAGRKETVIK MAKELSVLCD VPVALVCAVG GAVEVWESEE GVLDRYRALP PEVRATRAHT  60
HRGYLERELR ARRAKLAKVR EEGAFKSWGR DALSGIITAE EAPALLESID AAIAAATARQ  120
EALALLDGGG LHLQHVPASA SDAVAPVVGG HGVQVQYIGG SGGGGGSQQE MTPAADGDGA  180
RNADQYDDIL PWDGNTFEAH NAHVMLPACG FQCTGDYRVD MDGYVWGAPD DANAYHGWPD  240
EAMWCTDESC SCNAATATAV PAMYHPPTLD TVHGSFLAAP AQPLAFSTGA DFINAPNDFL  300
TVGVGGSFIN VGDYSAQSLA DEFHHLSDAT NQLDQTHYPP FGGTGGAEPG DTQSHSWGDY  360
YLAQSSANEC QLLGVDGGDI HLDQTHCLGG AGGAEPGDTK SHNWGG*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5ZB88
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g23750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g23750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y7W90.0A0A0D9Y7W9_9ORYZ; Uncharacterized protein
TrEMBLQ5ZB880.0Q5ZB88_ORYSJ; Os01g0340000 protein
STRINGOGLUM01G15980.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120
Representative plantOGRP1164635