PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g23840.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 213aa    MW: 24121.3 Da    PI: 7.8675
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g23840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.57.9e-2284172290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       f n+Y+ ++GF+vrk+ +++sk +g+ ++++fvC+keg+r+++k++    +++ra+trtgCk ++ v++++  gk+e+++l+leHn  l+
  LOC_Os01g23840.1  84 FSNHYGGQIGFDVRKRFENTSKLDGKAISAEFVCNKEGFRTNDKRD-PLIKTPRAVTRTGCKVHMGVTLNRvLGKYEIHDLVLEHNQILQ 172
                       7799***************************************999.9999********************9**************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1784171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEDTNKIRGD LKCDSLSIGR QQGPSHQQSS VPVVTSSRKD GQPQEYSCIQ SPSPVATSNR  60
EHIIPNWVPQ IEMTFSSVVE AQQFSNHYGG QIGFDVRKRF ENTSKLDGKA ISAEFVCNKE  120
GFRTNDKRDP LIKTPRAVTR TGCKVHMGVT LNRVLGKYEI HDLVLEHNQI LQTLETCHLL  180
PSQRRITEVH DYYVQTPFEQ RMNEGFLLSF CI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g23840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g23840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0033370.0AP003337.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1111_G12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316957.15e-49uncharacterized protein LOC100833015
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-16FAR1-related sequence 5