PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39160.1
Common NameB1129G05.33, B1151A10.14, LOC107280880
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 172aa    MW: 17865.2 Da    PI: 5.194
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.51.9e-32261321100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqq 86 
                       aCaaC++l+r+C+++C+la++fpa  +qp   + f+n+ +lFG+ nv+ +l a+  ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++
  LOC_Os01g39160.1  26 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLERE 118
                       7*********************996645456699*****************999889999********************************* PP

            DUF260  87 leqlkaelallkee 100
                       l++lkaela++++ 
  LOC_Os01g39160.1 119 LDCLKAELATAQSA 132
                       *********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.71125133IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-2926130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAQPWRPFVA DISPVAVADD DDPPAACAAC AHLGRACPTG CPLARCFPAA GDQPADGRLF  60
RNAFRLFGVG NVVGFLLAAG GDPGKRRDAA VSVAYEADAR ADDPVRGAHG VVMDLERELD  120
CLKAELATAQ SALARHRQYA QPPPPPPDAL DRARALNYFC HGCCGDVDGA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-162513610114LOB family transfactor Ramosa2.1
5ly0_B4e-162513610114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8L4M5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638310.11e-117LOB domain-containing protein 24
TrEMBLA0A0E0MYB01e-116A0A0E0MYB0_ORYRU; Uncharacterized protein
TrEMBLQ8L4M51e-116Q8L4M5_ORYSJ; Uncharacterized protein
STRINGORUFI01G22740.11e-116(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18117810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-15LOB domain-containing protein 1