PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39220.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 140aa    MW: 14864 Da    PI: 6.4977
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.45.4e-34111131100
            DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleql 90 
                       +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l+ l+a+ +++  r ++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++
  LOC_Os01g39220.1  11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILRRLEAAGPDTvtRLATMASIVFVSDARAADPVHGAYGVIRNLQQELASV 103
                       7*********9***************************************5555469************************************ PP

            DUF260  91 kaelallkee 100
                       kae+a+++++
  LOC_Os01g39220.1 104 KAEIAAIRQK 113
                       *****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.99310114IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2711111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILRRLEAA  60
GPDTVTRLAT MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP  120
PPALEDPPPP PVIFFSSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-121110911106LOB family transfactor Ramosa2.1
5ly0_B5e-121110911106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878934.17e-79LOB domain-containing protein 22-like
TrEMBLQ656S32e-88Q656S3_ORYSJ; Uncharacterized protein B1151A10.21
STRINGONIVA01G22790.15e-85(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-18LOB domain-containing protein 22