PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g43230.2

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 84aa MW: 9568.6 Da PI: 5.1502

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g43230.2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.3e-10	33	66	4	39
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +T+eE++l + +++ G++ W++Ia +++ gRt+k+ LOC_Os01g43230.2 33 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTAKE 66 9****************.*****.*986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-8	21	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-11	32	66	IPR009057	Homeodomain-like
CDD	cd00167	2.64E-7	33	66	No hit	No description
Pfam	PF00249	1.1E-8	33	66	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.005	33	66	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MDSSSGSQGK NSKTSDGCET KEVNNTAQNF VHFTEEEEDL VFRMHRLVGN RWELIAGRIP 60 GRTAKEQYTE GEIWCLETFP RRM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.41242	1e-108	callus\| leaf\| panicle\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, petioles, rosette leaves, hydathodes, cauline leaves, stems, pedicels and flower buds. {ECO:0000269\|PubMed:22168948, ECO:0000269\|PubMed:22489163}.

Functional Description ? help Back to Top
Source	Description
UniProt	MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269\|PubMed:22168948}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g43230.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g43230

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833447	1e-106	CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621960.1	3e-57	MYB-like transcription factor ETC3 isoform X1
Swissprot	B3H4X8	1e-16	TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBL	A0A0D9YBT1	2e-51	A0A0D9YBT1_9ORYZ; Uncharacterized protein
STRING	OGLUM01G26760.1	3e-52	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30424.1	6e-19	MYB_related family protein

Link Out ? help Back to Top
Phytozome	LOC_Os01g43230.2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang M,Hu Y,Liu X,Li Y,Hou X Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci, 2015. 6: p. 955 [PMID:26579186]