PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g48290.1
Common NameLOC107278438, P0007F06.34, P0485G01.24
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 176aa    MW: 17316.2 Da    PI: 10.429
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g48290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof91.75.9e-2983137558
            zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 
                        l+cprC s++tkfCy+nny++ qPr++C++CrryWt+GGalr v   + grr+ 
  LOC_Os01g48290.1  83 PLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASpGRRRP 137
                       689*****************************************98766255544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-2683136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.58384138IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-1786124IPR003851Zinc finger, Dof-type
PROSITE patternPS01361086122IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MANLPSTAAA AAADASGFKL FGKVIQPDGQ RGVEESAAAQ APPHPHPPAP PVMEAAAAAA  60
GTSQTLQAAG GGGGGGGGGG GEPLPCPRCG SRETKFCYFN NYNVRQPRHL CRSCRRYWTA  120
GGALRRVASA SPGRRRPRPS AARSAAAAAA SASAASPPAA VPAASEGAES VDSRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1008182e-34flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329811062e-34
Expression AtlasQ8W0I0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g48290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g48290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032230.0AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0032640.0AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619286.11e-118dof zinc finger protein 5-like
TrEMBLQ8W0I01e-116Q8W0I0_ORYSJ; DNA-binding protein Dof2-like
STRINGOS01T0673700-001e-115(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147161620
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.11e-19Dof family protein