PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g48446.1
Common NameLOC4325516, NAC14, OJ1117_G01.14, Os01g0675800, OsJ_02991, OSNPB_010675800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 291aa    MW: 31267.8 Da    PI: 9.3666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g48446.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.37.4e-24181438126
               NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                       hPtd+elv++yL+++v++  ++  + ++e+d+y ++P dL  k     ++ +++ wyfF++ ++k++ g+r+ ra+   g W++    k+v+ 
  LOC_Os01g48446.1  18 HPTDQELVTKYLRRHVDSGGNPW-RYVHEADVYAADPDDLTgKyspaVASDGSRAWYFFTTVRSKSTGGQRRARAVGdGGCWHSEAGAKDVVG 109
                       9*******************999.88**************84366644444777********************6553899***999999998 PP

               NAM  95 k..kgelvglkktLvfykgrapkgektdWvmhey 126
                          + + +g ++ + f +++ p+ +++ W+m e 
  LOC_Os01g48446.1 110 GirSPRPIGRRQFFSFVNKEGPRRVRSGWIMVEI 143
                       6656777************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.80211165IPR003441NAC domain
SuperFamilySSF1019411.2E-3515165IPR003441NAC domain
PfamPF023652.2E-1415142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSPSRPDEAD PAADFGSHPT DQELVTKYLR RHVDSGGNPW RYVHEADVYA ADPDDLTGKY  60
SPAVASDGSR AWYFFTTVRS KSTGGQRRAR AVGDGGCWHS EAGAKDVVGG IRSPRPIGRR  120
QFFSFVNKEG PRRVRSGWIM VEIGLKYAQQ NASSDELVLC KVYRSPRAPP AAAAANKSMA  180
APPPTATKSK TEEATPPPDD VKPVVAAAQT PDTKILRAAK EAAATGCKRK ADVKSSGARR  240
GKRLCSRCRA ETSESDSETA VLDRSPSIED ETADSSEIHG SSDGKFIRFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-141516319166Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.322520.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329907020.0
Expression AtlasQ8LQP7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g48446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g48446
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033740.0AP003374.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1117_G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621657.10.0NAC domain-containing protein 2
TrEMBLQ8LQP70.0Q8LQP7_ORYSJ; NAC transcription factor 14
STRINGOS01T0675800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1201646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-15NAC domain containing protein 47