PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g48470.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LFY
Protein Properties Length: 148aa    MW: 17313.2 Da    PI: 10.4827
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g48470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY244.9e-084187172216
           FLO_LFY 172 elvaaeekkseeekkkaskkkqkrkkkkelkse..ededeeeeeded 216
                       e +++++kk++++kkk++kkk+k+kkkk+++++  e+edeeeee+e+
  LOC_Os01g48470.1  41 EHIKKKKKKKKKKKKKKKKKKKKKKKKKKKRERerEEEDEEEEEEEE 87 
                       22222222222222222222222222222222211222222222222 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008483Molecular Functiontransaminase activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MRPTRTPIAS LSNAPTHSSR GKPTSSLSPP YSRYSSSRAL EHIKKKKKKK KKKKKKKKKK  60
KKKKKKKKKK REREREEEDE EEEEEEEELK LNEYIWDIYE AAKGINEKLM PGIVVYLAVH  120
DECVRLRLTG VDVKHEAWEI CLTPVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15670KKKKKKKKKKKKKKR
25770KKKKKKKKKKKKKR
36069KKKKKKKKKK
46270KKKKKKKKR
56470KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g48470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g48470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033741e-160AP003374.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1117_G01.
GenBankAP0149571e-160AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ5QM295e-75Q5QM29_ORYSJ; Aminotransferase-like