PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g56530.1
Common NameLOC4324706, Os01g0772100, OSNPB_010772100, P0695H10.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 246aa    MW: 25730 Da    PI: 7.8861
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g56530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.64.9e-34381531100
            DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 
                       +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll+++p   r++a+++++yeA+ar+ dPvyG+v
  LOC_Os01g56530.1  38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRREAARTVCYEAQARIADPVYGSV 130
                       7*********************************998555559************************************************** PP

            DUF260  78 gvilklqqqleqlkaelallkee 100
                       g+il+lq+q++ l+ +l++l+++
  LOC_Os01g56530.1 131 GTILALQHQVSLLQGQLSVLESQ 153
                       *****************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.63837154IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-3838151IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SSAGPGAPCG ACKFLRRRCV PGCVFAPHFS  60
GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRREA ARTVCYEAQA  120
RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH  180
SAASTLNQVV VNYDDLPHAV DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV  240
GQRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-32311554112LOB family transfactor Ramosa2.1
5ly0_B7e-32311554112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911720.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5N8Y9
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g56530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g56530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630092.11e-176LOB domain-containing protein 20
SwissprotQ9SRV32e-45LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0E0N3261e-174A0A0E0N326_ORYRU; Uncharacterized protein
TrEMBLQ5N8Y91e-174Q5N8Y9_ORYSJ; Lateral organ boundaries domain protein 18-like
STRINGORUFI01G35770.11e-175(Oryza rufipogon)
STRINGOS01T0772100-011e-175(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-22LOB domain-containing protein 20