PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g58420.1
Common NameLOC4327621, Os01g0797600, OsJ_03753, OSNPB_010797600, P0699H05.40
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 236aa    MW: 24270.5 Da    PI: 9.9084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g58420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-213283156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  LOC_Os01g58420.1 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                      68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-183290No hitNo description
PfamPF008471.6E-143282IPR001471AP2/ERF domain
SMARTSM003802.2E-373396IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-233391IPR016177DNA-binding domain
PROSITE profilePS5103224.3683390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-323390IPR001471AP2/ERF domain
PRINTSPR003673.2E-113445IPR001471AP2/ERF domain
PRINTSPR003673.2E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAPRAATVEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVGCG GSPSSNSTVD TGGGGVQTPM  120
RAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFRGYPVARP ATHPYFFYEQ AAAAAAAEAG  180
YRMMKLAPPV TVAAVAQSDS DSSSVVDLAP SPPAVTANKA AAFDLDLNRP PPVEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222995168ATERF1
3gcc_A1e-222995168ATERF1
5wx9_A9e-222490572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.37660.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172477300.0
Expression AtlasQ7F4G5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g58420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g58420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0368830.0AB036883.1 Oryza sativa mRNA for osERF3, complete cds.
GenBankAB0371830.0AB037183.1 Oryza sativa osERF3 mRNA for ethylene responsive element binding factor3, complete cds.
GenBankAK0613800.0AK061380.1 Oryza sativa Japonica Group cDNA clone:006-304-H01, full insert sequence.
GenBankAP0032990.0AP003299.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0699H05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankKM2628350.0KM262835.1 Oryza sativa Indica Group cultivar Nagina 22 Aptella 2-like transcription factor (AP37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622082.11e-167ethylene-responsive transcription factor 8
TrEMBLA0A0E0FUE61e-166A0A0E0FUE6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N3L81e-166A0A0E0N3L8_ORYRU; Uncharacterized protein
TrEMBLA2WVZ61e-166A2WVZ6_ORYSI; Aptella 2-like transcription factor
TrEMBLQ7F4G51e-166Q7F4G5_ORYSJ; Ethylene responsive element binding factor3
TrEMBLQ9LRF31e-166Q9LRF3_ORYSA; Ethylene responsive element binding factor3
STRINGORUFI01G37120.11e-166(Oryza rufipogon)
STRINGOS01T0797600-011e-166(Oryza sativa)
STRINGONIVA01G38670.11e-166(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.19e-22ethylene responsive element binding factor 4