PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g62130.1
Common NameLOC4327377, Os01g0838600, OSNPB_010838600, P0031D11.18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 218aa    MW: 22737.9 Da    PI: 9.6729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g62130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00135981123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  LOC_Os01g62130.1 59 FECKTCNRQFPTFQALGGHRASH 81
                      89**********99999998887 PP
2zf-C2H210.70.0017122144123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp Cg  F+    L  H+r+H
  LOC_Os01g62130.1 122 HECPVCGLEFPIGQALGGHMRRH 144
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-85781No hitNo description
PfamPF139121.1E-125883IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1185986IPR007087Zinc finger, C2H2
SMARTSM003550.185981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-8117144No hitNo description
PfamPF139124.2E-11121146IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806122149IPR007087Zinc finger, C2H2
SMARTSM003550.14122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSKRSRSMWD MQEFVGSVDT ARVLMLLAQQ SQHGLLGGGG FAAGAQPVVV RGGAHDRVFE  60
CKTCNRQFPT FQALGGHRAS HKRPRQQQQH ALGGGAGADD AGLCLGRQPT PPRPQPAKPR  120
VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL  180
DLNLTPSENR AKCRNVVGLG AGGQGVHKAL AMLDCFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.280230.0seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5NA12
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g62130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g62130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032310.0AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633806.11e-157zinc finger protein ZAT12
TrEMBLA0A0D9YH171e-156A0A0D9YH17_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N4R11e-156A0A0E0N4R1_ORYRU; Uncharacterized protein
TrEMBLQ5NA121e-156Q5NA12_ORYSJ; Os01g0838600 protein
STRINGOGLUM01G40470.11e-156(Oryza glumipatula)
STRINGORUFI01G40000.11e-156(Oryza rufipogon)
STRINGOS01T0838600-001e-156(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-24C2H2 family protein