PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g62190.1
Common NameLOC9272517, Os01g0839100, OSNPB_010839100, P0031D11.27, P0408C03.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 172aa    MW: 17945 Da    PI: 5.0232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g62190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0014769123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k+F++   L  H  +H
  LOC_Os01g62190.1 47 FECKTCSKRFPSFQALGGHRTSH 69
                      89**********99998888777 PP
2zf-C2H211.50.0009396118123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cg  Fs    L  H+r+H
  LOC_Os01g62190.1  96 HECAVCGVEFSMGQALGGHMRRH 118
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.12E-64371No hitNo description
PfamPF139123.7E-124669IPR007087Zinc finger, C2H2
SMARTSM003550.184769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4294774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-694122No hitNo description
PfamPF139127.4E-1295120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-495122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8996118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9996123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTITREEAES KEMESLRVHA SALLSLSSPA ASASQPTSSS STTEGVFECK TCSKRFPSFQ  60
ALGGHRTSHT RLQAKLLSDP AAAAAAAAER DRARVHECAV CGVEFSMGQA LGGHMRRHRG  120
ETGTTTVVLA DADDSGGATV PQPPEPMPDL NYPPLEDAGD GSEPELLNLL V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.104110.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5NA09
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g62190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g62190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082270.0AK108227.1 Oryza sativa Japonica Group cDNA clone:002-140-F08, full insert sequence.
GenBankAP0032310.0AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0032410.0AP003241.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408C03.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY0777250.0AY077725.1 Oryza sativa C2H2 zinc finger protein (ZFP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634661.11e-121zinc finger protein ZAT8
TrEMBLQ5NA091e-120Q5NA09_ORYSJ; C2H2 zinc finger protein
TrEMBLQ8S9G91e-120Q8S9G9_ORYSA; C2H2 zinc finger protein
STRINGOS01T0839100-011e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.19e-25C2H2 family protein