PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g62514.1
Common NameOs01g0842801, OSNPB_010842801
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 196aa    MW: 21158.8 Da    PI: 9.4863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g62514.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY352.8e-11165185222
                       --SS-EEEEEEE--TT-SS-E CS
              WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                        Dgy+WrKYGqK++k++++pr
  LOC_Os01g62514.1 165 ADGYKWRKYGQKSIKNNPHPR 185
                       6*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-10161186IPR003657WRKY domain
SuperFamilySSF1182908.37E-9162186IPR003657WRKY domain
SMARTSM007743.1E-5164195IPR003657WRKY domain
PROSITE profilePS5081111.508166195IPR003657WRKY domain
PfamPF031064.9E-8166186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MYGQSPHKQR RRFPGPYLMG DVLRAQATAS AEEVAGGVWP CELDDHLIGE LLGDDGLFVP  60
AAEHPTLYYS FGAGSSAAAA AAPCNGGGSA DHERRPRPAP AVSRDLCSVY SGPTIRDIEK  120
ALSSSASPRP PYPSGRRYSS LYFRRVEAES KYTSKVRSCG GKMPADGYKW RKYGQKSIKN  180
NPHPRCATRS IIDPI*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0VA49
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g62514.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g62514
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8355090.0CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-131WRKY transcription factor WRKY28
TrEMBLA0A0P0VA491e-140A0A0P0VA49_ORYSJ; Os01g0842801 protein
STRINGOS01T0842801-001e-141(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-10WRKY DNA-binding protein 49