PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g66270.1
Common NameLOC107276354, Os01g0885900, OSNPB_010885900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 190aa    MW: 19825.1 Da    PI: 7.9777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g66270.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161565155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  LOC_Os01g66270.1 15 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 65
                      78*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-91565IPR001471AP2/ERF domain
SMARTSM003807.2E-251686IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-251681IPR001471AP2/ERF domain
PROSITE profilePS5103220.9291680IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-161667IPR016177DNA-binding domain
PRINTSPR003671.0E-81728IPR001471AP2/ERF domain
CDDcd000185.85E-132481No hitNo description
PRINTSPR003671.0E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSRAECGGGE EEERCRYRGV RRRRWGKWVS EIRVPGTRER LWLGSYATPE AAAVAHDTAV  60
YFLRGGAGDG GGGGATLNFP ERAAATYGGG AAVARLSPRS VQRVASDAGM AADAQLVAAR  120
DAAPAPAPAT AYARPDHCAG ATTARHDELA RRGMYGAHAH AAGANARTSG ERQLVCAEEI  180
SVDDMEILM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1113801172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0VBD5
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g66270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g66270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033460.0AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04.
GenBankAP0033790.0AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645971.11e-131ethylene-responsive transcription factor ERF015
TrEMBLA0A0P0VBD51e-130A0A0P0VBD5_ORYSJ; Os01g0885900 protein
TrEMBLQ8S0R01e-130Q8S0R0_ORYSJ; AP2 domain-containing transcription factor-like protein
STRINGOS01T0885900-001e-130(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-21ERF family protein