PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68860.1
Common NameLOC4324354, Os01g0917400, P0413C03.19-1, P0413C03.19-2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 440aa    MW: 47852.2 Da    PI: 8.6646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-1082107227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C +++rtG C++G +C+F+H++
  LOC_Os01g68860.1  82 GEPDCTYYLRTGLCRFGMSCRFNHPQ 107
                       6899********************97 PP
2zf-CCCH38.91.4e-12127152227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tGtCk+G++CkF+H++
  LOC_Os01g68860.1 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152
                       5799********************96 PP
3zf-CCCH37.15.1e-12174198327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C ++++tG+CkyG++CkF+H++
  LOC_Os01g68860.1 174 EKECAYYLKTGQCKYGNTCKFHHPE 198
                       679********************96 PP
4zf-CCCH39.31.1e-12334359227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tG Ck+G+ CkF+H++
  LOC_Os01g68860.1 334 DQPECQYYMKTGDCKFGAVCKFHHPR 359
                       689*********************96 PP
5zf-CCCH41.81.8e-13379404126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++elC+f++r+G+Ck+G++CkF H+
  LOC_Os01g68860.1 379 PGEELCKFYSRYGICKFGANCKFDHP 404
                       689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.35280108IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-580107IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-882107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-585108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-486107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986125153IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5125152IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10127152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6128154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5131153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868171199IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5171198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6172198IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9174198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5177197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023332360IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5332359IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4338358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413378406IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7378405IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10380404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6380405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5382403IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDDAGRASAP AVVTVTASAA APTPPLPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM  60
WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG  120
EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY  180
LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPYTGTMA SWAFPRGSFI  240
PSPRWQNPSN YAPMIVPQGL VQVPSWNSYT GQMMPVSSSE SRLQSPGAQQ TYGTSQQVDA  300
SAGNQGMLSP YRSSSYPVPQ YALQRENVFP ERPDQPECQY YMKTGDCKFG AVCKFHHPRV  360
RSMPTPDCVL SPVGLPLRPG EELCKFYSRY GICKFGANCK FDHPTMAPPM GVYAYGSAST  420
NVPMVRRLLQ SPSASAYTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.190860.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887650.0
Expression AtlasQ5JLB5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLH6BEJ80.0H6BEJ8_ORYSI; CCCH-type zinc finger protein
STRINGOS01T0917400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  3. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]