PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68860.3
Common NameLOC4324354, Os01g0917400, P0413C03.19-1, P0413C03.19-2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 238aa    MW: 25904.3 Da    PI: 9.1274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68860.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.45e-13132157227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tG Ck+G+ CkF+H++
  LOC_Os01g68860.3 132 DQPECQYYMKTGDCKFGAVCKFHHPR 157
                       689*********************96 PP
2zf-CCCH42.98e-14177202126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++elC+f++r+G+Ck+G++CkF H+
  LOC_Os01g68860.3 177 PGEELCKFYSRYGICKFGANCKFDHP 202
                       689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-5130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023130158IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9132157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5133157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4136156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413176204IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6178203IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-11178202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5180201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MASSRGSPIY PSVHSSATAG PPYTGTMASW AFPRGSFIPS PRWQNPSNYA PMIVPQGLVQ  60
VPSWNSYTGQ MMPVSSSESR LQSPGAQQTY GTSQQVDASA GNQGMLSPYR SSSYPVPQYA  120
LQRENVFPER PDQPECQYYM KTGDCKFGAV CKFHHPRVRS MPTPDCVLSP VGLPLRPGEE  180
LCKFYSRYGI CKFGANCKFD HPTMAPPMGV YAYGSASTNV PMVRRLLQSP SASAYTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.190860.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887650.0
Expression AtlasQ5JLB5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68860.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
GenBankAK1119580.0AK111958.1 Oryza sativa Japonica Group cDNA clone:001-030-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.11e-171zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB51e-172C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0P0VC181e-173A0A0P0VC18_ORYSJ; Os01g0917400 protein (Fragment)
TrEMBLA0A0P0VC321e-172A0A0P0VC32_ORYSJ; Os01g0917400 protein (Fragment)
TrEMBLB7F4E11e-173B7F4E1_ORYSJ; cDNA clone:001-030-A08, full insert sequence
STRINGOS01T0917400-011e-171(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-66zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  3. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]