PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g69910.2
Common NameB1455F06.32-1, LOC4327253, Os01g0923600, OsJ_04592, OSNPB_010923600, P0592G05.16-1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 851aa    MW: 96270.6 Da    PI: 7.5751
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g69910.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.81.2e-54121301118
              CG-1   1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                       l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+
  LOC_Os01g69910.2  12 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNS 104
                       567889*************************************************************************************** PP

              CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                       tfqrr+yw+L+ ++++iv+vhy++v+
  LOC_Os01g69910.2 105 TFQRRIYWMLDPAYDHIVFVHYRDVQ 130
                       ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.9329135IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-6912130IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4816129IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.28E-13314397IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.104.3E-5314399IPR013783Immunoglobulin-like fold
CDDcd001020.00898315398No hitNo description
CDDcd002046.16E-11489611No hitNo description
PfamPF136371.5E-9521573No hitNo description
SuperFamilySSF484031.21E-15523614IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-16524614IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.255524584IPR020683Ankyrin repeat-containing domain
SMARTSM002481.9E-4552581IPR002110Ankyrin repeat
PROSITE profilePS5008811.541552584IPR002110Ankyrin repeat
SMARTSM000150.012713735IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181714743IPR000048IQ motif, EF-hand binding site
PfamPF006120.013715734IPR000048IQ motif, EF-hand binding site
SMARTSM000150.83736758IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169737765IPR000048IQ motif, EF-hand binding site
PfamPF006120.05738758IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.632814843IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MQHQQGFDTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR  60
YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH  120
IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE  180
EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT  240
VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL  300
HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVHAEIV  360
QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE  420
LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGASERL  480
NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL  540
NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS  600
AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRVVG RISDTSAHAQ SGSDDQLALK  660
ESLGAMRYAV QAAGRIQTAF RIFSFRKKQQ AGLQNRGNHI ISIREVGAAS HGMLEKAALS  720
IQKNFRCWKK RKEFLKIRKN VIKIQARVRA HQQHNKYKEL LRSVGILEKV MLRWYRKGVG  780
LRGFHPGAIA MPIDEEDEDD VAKVFRKQRV ETALNKAVSR VSSIIDSPVA RQQYRRMLKM  840
HKQNKDDDEK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.189590.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329789560.0
Expression AtlasQ5JJP3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g69910.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g69910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649561.10.0calmodulin-binding transcription activator 4 isoform X2
TrEMBLQ5JJP30.0Q5JJP3_ORYSJ; Os01g0923600 protein
STRINGOS01T0923600-020.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.11e-105calmodulin binding;transcription regulators