PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g71790.1
Common NameLOC4325828, Os01g0946200, OSNPB_010946200, P0614D08.37, P0660F12.31
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 205aa    MW: 22478.5 Da    PI: 9.3206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g71790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.1e-19171484128
               NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWk..atgkd 89 
                       G+ F+Pt++el+ ++L+++++g   +++ ++ e+d + + Pw+L ++ +++++e +fFs r++++++ +r+           g W   +t + 
  LOC_Os01g71790.1  17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRREEGFFFSARARRKPSVRRTVAGcggggGGGGAWMhsSTKNG 108
                       999*********************9**999**************744.4566788********999866666643444444899*84355666 PP

               NAM  90 kevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                       ++v++ +  + +++    fy +g+  + ++t W+m ey++
  LOC_Os01g71790.1 109 QSVTDLGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 148
                       78888788999*********888999999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-315174IPR003441NAC domain
PROSITE profilePS5100525.77214174IPR003441NAC domain
PfamPF023653.8E-1217148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL  60
LARHGRREEG FFFSARARRK PSVRRTVAGC GGGGGGGGAW MHSSTKNGQS VTDLGVVVRW  120
CRINYCFYVR GEMGQQRSTG WMMAEYEITD PRCYRRADDG EEDDFWVLCH VRKSSRPQAA  180
KISPAKPARR RKPAAAAAAD VRAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.345200.0flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ94CP9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g71790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g71790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710600.0AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence.
GenBankAP0036870.0AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12.
GenBankAP0040730.0AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641921.11e-148NAC domain-containing protein 48-like isoform X1
RefseqXP_015641928.11e-148NAC domain-containing protein 48-like isoform X2
TrEMBLA0A0E0N7K11e-147A0A0E0N7K1_ORYRU; Uncharacterized protein
TrEMBLQ94CP91e-147Q94CP9_ORYSJ; Os01g0946200 protein
STRINGORUFI01G47190.11e-148(Oryza rufipogon)
STRINGOS01T0946200-011e-148(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Representative plantOGRP1441334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-12NAC domain containing protein 47