PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g74540.1
Common NameLOC4327810, Os01g0976800, OsJ_04967, OSNPB_010976800, P0020E09.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 143aa    MW: 15564.8 Da    PI: 9.8806
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g74540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.3e-192458135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  LOC_Os01g74540.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-161875IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7031854IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-121957No hitNo description
Gene3DG3DSA:3.30.50.101.5E-152258IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-142358No hitNo description
PfamPF003202.1E-172458IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA  60
LGLDSSATAT ATDGAEQQKK TKAKKEKAQE EEVTMELHTV GFRSKDAAVF KQRRRMRRRK  120
CLGEEERAAI LLMALSSGVI YA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
2111117QRRRMRR
3112119RRRMRRRK
4113118RRMRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.429410.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975984220.0
Expression AtlasQ5JNB8-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g74540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g74540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416430.0AK241643.1 Oryza sativa Japonica Group cDNA, clone: J065189M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641177.11e-101GATA transcription factor 16
TrEMBLQ5JNB81e-100Q5JNB8_ORYSJ; Os01g0976800 protein
STRINGOS01T0976800-011e-101(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-24GATA transcription factor 16