PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g02480.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 168aa    MW: 17903.3 Da    PI: 4.5958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g02480.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-1270117454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRdr+N++f eL +++ ++   ++ Kl+Ka iL  A + + +L
  LOC_Os02g02480.2  70 SKACREKIRRDRLNDRFLELSSVINPD---KQAKLDKANILSDAARLLAEL 117
                       6789***********************...**************9887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.9E-1359133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.25266117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-969122No hitNo description
PfamPF000103.8E-970117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1371140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-772123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR  60
DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK LDKANILSDA ARLLAELRGE  120
AEKLKESNEK LRETIKDLKV FCSHNFLPST PGLECLMPST VMSCVLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.178930.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886430.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g02480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g02480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608810.0AK060881.1 Oryza sativa Japonica Group cDNA clone:001-035-A10, full insert sequence.
GenBankAK1034340.0AK103434.1 Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence.
GenBankAK1041880.0AK104188.1 Oryza sativa Japonica Group cDNA clone:006-303-B03, full insert sequence.
GenBankEU8372630.0EU837263.1 Oryza sativa Japonica Group clone KCS043C03 bHLH transcription factor mRNA, complete cds.
GenBankHQ8588540.0HQ858854.1 Oryza sativa Japonica Group isolate UT1617 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626366.16e-94transcription factor ILR3
TrEMBLA0A0D3EZT61e-92A0A0D3EZT6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YLC11e-92A0A0D9YLC1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G0481e-92A0A0E0G048_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N8V41e-92A0A0E0N8V4_ORYRU; Uncharacterized protein
TrEMBLA2X0431e-92A2X043_ORYSI; Uncharacterized protein
TrEMBLI1NWK61e-92I1NWK6_ORYGL; Uncharacterized protein
TrEMBLQ6ZGM41e-92Q6ZGM4_ORYSJ; BHLH transcription factor
STRINGOGLUM02G01100.12e-93(Oryza glumipatula)
STRINGORUFI02G01220.12e-93(Oryza rufipogon)
STRINGOS02T0116600-012e-93(Oryza sativa)
STRINGONIVA02G01100.12e-93(Oryza nivara)
STRINGORGLA02G0011200.12e-93(Oryza glaberrima)
STRINGOBART02G01220.12e-93(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-17bHLH family protein