PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os02g03960.1

Common Name

LOC4328205, Os02g0132500, OsJ_05262, OSNPB_020132500

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 164aa MW: 16895 Da PI: 7.5194

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os02g03960.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.2	3.2e-12	36	79	4	47
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r+ +NRe+ArrsR RK+ ++ L+ v+ L eN + LOC_Os02g03960.1 36 QRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVAT 79 689************************************87664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	33	97	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.783	35	77	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-10	36	78	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.8E-10	37	109	No hit	No description
SuperFamily	SSF57959	3.05E-11	37	87	No hit	No description
CDD	cd14702	1.51E-15	38	86	No hit	No description
PROSITE pattern	PS00036	0	40	55	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0080149	Biological Process	sucrose induced translational repression
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009071	anatomy	anther wall tapetum
PO:0001013	developmental stage	H late unicellular microspore stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASSSGSGGS AVSAATAAAG GSSSAAEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL 60 DDLTAQVAHL RRENAHVATA LGLTTQGLLA VDAENAVLRT QAAELAARLA SLNDILSCIN 120 TNGAAAAAAA ALTVAAATDP LLAFDSAAFD DLFRSSPELF QLC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	56	RRSRMRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.21442	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32980910	0.0
Expression Atlas	Q0E476	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in stems and flowers (PubMed:9620274). Expressed in root tips, cotyledons, leaf vasculature, embryos, apical parts of siliques and funiculi (PubMed:9721683). {ECO:0000269\|PubMed:9620274, ECO:0000269\|PubMed:9721683}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA sequence 5'-ACTCAT-3' in target gene promoters. Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879). Positively regulates the expression of ASN1 and POX2/PRODH2 genes, which are involved in amino acid metabolism (PubMed:18088315). Regulates several metabolic pathways such as myo-inositol, raffinose and trehalose. Regulates several trehalose metabolism genes, including TRE1, TPP5 and TPP6 (PubMed:21534971). Mediates recruitment of the histone acetylation machinery to activate auxin-induced transcription. Interacts with ADA2B adapter protein to promote ADA2B-mediated recruitment of SAGA-like histone acetyltransferase complexes to specific auxin-responsive genes (PubMed:24861440). {ECO:0000269\|PubMed:15047879, ECO:0000269\|PubMed:18088315, ECO:0000269\|PubMed:21534971, ECO:0000269\|PubMed:24861440}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00470	DAP	Transfer from AT4G34590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os02g03960.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light (PubMed:9620274). Induced by hypoosmolarity (PubMed:15047879). Repressed by sucrose (at protein level) (PubMed:9721683, PubMed:15208401). {ECO:0000269\|PubMed:15047879, ECO:0000269\|PubMed:15208401, ECO:0000269\|PubMed:9620274, ECO:0000269\|PubMed:9721683}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os02g03960

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070887	0.0	AK070887.1 Oryza sativa Japonica Group cDNA clone:J023064O22, full insert sequence.
GenBank	AP004997	0.0	AP004997.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622690.1	1e-109	bZIP transcription factor 11
Swissprot	O65683	3e-35	BZP11_ARATH; bZIP transcription factor 11
TrEMBL	A0A0E0G0P0	1e-107	A0A0E0G0P0_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N9D2	1e-107	A0A0E0N9D2_ORYRU; Uncharacterized protein
TrEMBL	A2X0K0	1e-107	A2X0K0_ORYSI; Uncharacterized protein
TrEMBL	I1NWZ1	1e-107	I1NWZ1_ORYGL; Uncharacterized protein
TrEMBL	Q0E476	1e-107	Q0E476_ORYSJ; Os02g0132500 protein
STRING	ORUFI02G02580.1	1e-108	(Oryza rufipogon)
STRING	OS02T0132500-01	1e-108	(Oryza sativa)
STRING	ONIVA02G02510.1	1e-108	(Oryza nivara)
STRING	ORGLA02G0024700.1	1e-108	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4459	33	67
Representative plant	OGRP551	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34590.1	3e-28	G-box binding factor 6

Link Out ? help Back to Top
Phytozome	LOC_Os02g03960.1
Entrez Gene	4328205

Publications ? help Back to Top
Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Sagor GH, et al. A novel strategy to produce sweeter tomato fruits with high sugar contents by fruit-specific expression of a single bZIP transcription factor gene. Plant Biotechnol. J., 2016. 14(4): p. 1116-26 [PMID:26402509] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Wang XY, et al. Metabolomic analysis reveals the relationship between AZI1 and sugar signaling in systemic acquired resistance of Arabidopsis. Plant Physiol. Biochem., 2016. 107: p. 273-287 [PMID:27337039] Weiste C, et al. The Arabidopsis bZIP11 transcription factor links low-energy signalling to auxin-mediated control of primary root growth. PLoS Genet., 2017. 13(2): p. e1006607 [PMID:28158182] Yamashita Y, et al. Sucrose sensing through nascent peptide-meditated ribosome stalling at the stop codon of Arabidopsis bZIP11 uORF2. FEBS Lett., 2017. 591(9): p. 1266-1277 [PMID:28369795] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Lee DH,Park SJ,Ahn CS,Pai HS MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway. Plant Cell, 2017. 29(11): p. 2895-2920 [PMID:29084871] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]