PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g08510.1
Common NameLOC107277916, OJ1297_C09.29, Os02g0182300, OSNPB_020182300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 195aa    MW: 20224.5 Da    PI: 6.7946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g08510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002280102123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C++C + F ++  L  H++ H
  LOC_Os02g08510.1  80 FACHYCRREFYSSQALGGHQNAH 102
                       78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-678107No hitNo description
PROSITE profilePS5015711.11580107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEGMSKLAGG GGDVTFVGGG RRMAAAAAAA LRLVELDLIG TVGAAVPGQA TAPRLLVVSP  60
APAKEEERDG DDDGEPRQLF ACHYCRREFY SSQALGGHQN AHKRERTLAR RGAGAGAGGE  120
QASSSSFAIH HGAFVSASPG WMARVLHGEA PPAISVAGDG GGGERWWWGG GNVGYYWPRD  180
GDDQTRQLDL TLKL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H802
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g08510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g08510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040870.0AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624955.11e-137zinc finger protein 1
TrEMBLQ6H8021e-136Q6H802_ORYSJ; Os02g0182300 protein
STRINGOS02T0182300-001e-137(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-15zinc finger protein 3