PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g10080.2
Common NameLOC4328599, Os02g0194200, OsJ_005555, P0437H03.134
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 232aa    MW: 23952.4 Da    PI: 9.9155
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g10080.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-083257227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ +     Ck Gd+C+FaHg+
  LOC_Os02g10080.2 32 KTRLCNKYNTAEGCKWGDKCHFAHGE 57
                      8***********************96 PP
2zf-CCCH35.32e-11197222127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC +f + G C +GdrC+FaHg+
  LOC_Os02g10080.2 197 FKTKLCENFTK-GSCTFGDRCHFAHGE 222
                       69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-142762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-82961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0753058IPR000571Zinc finger, CCCH-type
SMARTSM003560.0693057IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-1492171IPR004088K Homology domain, type 1
SMARTSM003221.9E-9100170IPR004087K Homology domain
PROSITE profilePS5008414.676101165IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.0E-14101169IPR004088K Homology domain, type 1
PfamPF000139.3E-11103167IPR004088K Homology domain, type 1
CDDcd001052.35E-13103165No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-16194227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9196226IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009196223IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9197222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTNLGGPAIA PPPGRMPMGN AVPDGPPTPT VKTRLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKPMLMDSSM PPPMGPRPTG HFAPPPMPSP AMSTPASFGA SATAKISVDA SLAGGIIGRG  120
GVNTKQISRV TGAKLAIRDH ESDTNLKNIE LEGTFDQIKN ASAMVRELIV SIGGGAPPQG  180
KKPVGGSHRG GGPGSNFKTK LCENFTKGSC TFGDRCHFAH GENELRKSAA A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.42650.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975987600.0
Expression AtlasQ7F8R0-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g10080.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g10080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423410.0AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
GenBankAP0003660.0AP000366.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0437H03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCT8353830.0CT835383.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106D07, full insert sequence.
GenBankCT8353840.0CT835384.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626985.11e-167zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-168C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0D9YNN41e-166A0A0D9YNN4_9ORYZ; Uncharacterized protein
STRINGOGLUM02G07170.11e-167(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-50C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]