PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g10420.1
Common NameLOC107276623, OJ1524_D08.32, OsJ_05761, P0026H03.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 111aa    MW: 12221.8 Da    PI: 9.3249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g10420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-179781886
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                      +p +f e+hg+  +e  +++    +grsW+v+l++    r +++r vl+ GW +F+ +ngL +gD++ F+  +
  LOC_Os02g10420.1  9 VPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 78
                      7999*****998665..455.45599*******998887777788************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.9291104IPR003340B3 DNA binding domain
SMARTSM010190.00331104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-248104IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-12975No hitNo description
SuperFamilySSF1019362.16E-15978IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-14978IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MSAMLNENVP VEFQEAHGYA AREKVVLRMR GRSWTVRLKH TKGRRPRRER AVLRYGWHRF  60
CADNGLAVGD TCFFRALRSA GSGAGDVDDG DGDHVLSVTV HKADGGDPLE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449RPRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.70369e-57flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329808849e-57
Expression AtlasA3A463-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g10420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g10420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041911e-175AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0048121e-175AP004812.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0026H03.
GenBankAP0149581e-175AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-175CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878688.13e-60B3 domain-containing protein LOC_Os02g10420, partial
SwissprotA3A4633e-77Y2042_ORYSJ; B3 domain-containing protein LOC_Os02g10420
TrEMBLA0A0E0NB807e-75A0A0E0NB80_ORYRU; Uncharacterized protein
STRINGORUFI02G07540.11e-75(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Representative plantOGRP1414234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.14e-08B3 family protein