PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g13670.1
Common NameOSJNBb0035N08.33
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 211aa    MW: 21955.6 Da    PI: 10.5342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g13670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.2e-062093655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS
               HLH  6 nerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55
                      +  Er RR+++N+ ++ L +l+ +a+                        ++ +   +  + L  A eYI++ q
  LOC_Os02g13670.1 20 KTTERIRREQMNKLYSHLDSLVRSAPptvnsipshsnsnskyhqrklrilGGAAAATTRPDRLGVAAEYIRQTQ 93
                      568*********************66699999999999999999999997667777888888888888888866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-520106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-62042IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-670108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEIPPPSAGG GGGGGKPDRK TTERIRREQM NKLYSHLDSL VRSAPPTVNS IPSHSNSNSK  60
YHQRKLRILG GAAAATTRPD RLGVAAEYIR QTQERVDMLR EKKRELTGGG GGGSSSSSGA  120
GAATAAAPEV EVQHLGSGLH AILFTGAPPT DGASFHRAVR AVEDAGGQVQ NAHFSVAGAK  180
AVYTIHAMIG DGYGGIERVV QRLKEAIRSN *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H522
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g13670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g13670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057560.0AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.15e-72PREDICTED: uncharacterized protein LOC107303503
TrEMBLQ6H5221e-149Q6H522_ORYSJ; Uncharacterized protein OSJNBb0035N08.33
STRINGORGLA02G0086900.11e-110(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Representative plantOGRP1445944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-14bHLH family protein